STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_3092PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: csa:Csal_3004 membrane protein involved in aromatic hydrocarbon degradation. (450 aa)    
Predicted Functional Partners:
Plav_3090
PFAM: AMP-dependent synthetase and ligase; KEGG: sal:Sala_1007 AMP-dependent synthetase and ligase.
  
  
 0.596
Plav_3091
PFAM: 2-nitropropane dioxygenase NPD; KEGG: sal:Sala_1009 2-nitropropane dioxygenase, NPD.
       0.576
Plav_3093
PFAM: extracellular solute-binding protein family 5; KEGG: nha:Nham_2050 extracellular solute-binding protein, family 5.
     
 0.478
Plav_1491
PFAM: AMP-dependent synthetase and ligase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: bvi:Bcep1808_5958 AMP-dependent synthetase and ligase.
  
  
 0.423
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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