STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_3206KEGG: bba:Bd1177 hypothetical protein. (566 aa)    
Predicted Functional Partners:
Plav_0591
KEGG: mlo:mll4444 hypothetical protein.
  
     0.725
Plav_2592
PFAM: regulatory protein TetR; KEGG: mbb:BCG_0369c hypothetical protein.
  
     0.714
Plav_0847
PFAM: OmpA/MotB domain protein; KEGG: pau:PA14_53500 hypothetical protein.
 
 
   0.712
Plav_0590
SMART: Parallel beta-helix repeat; KEGG: mlo:mll4444 hypothetical protein.
  
     0.708
Plav_0868
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sme:SMc00089 hypothetical protein.
 
     0.701
Plav_2632
KEGG: rpe:RPE_2309 hypothetical protein.
  
     0.680
Plav_0939
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: dar:Daro_2852 hypothetical protein.
  
     0.666
Plav_2570
KEGG: rpb:RPB_3777 flagellar basal-body rod protein FlgB.
    
   0.661
Plav_3089
PFAM: Phosphoglycerate mutase; KEGG: hne:HNE_1982 phosphoglycerate mutase family protein.
 
   
 0.660
Plav_1373
PFAM: aldo/keto reductase; KEGG: ath:AT4G33670 aldo-keto reductase/ oxidoreductase.
 
   
 0.613
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.