STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_3265KEGG: rpe:RPE_2970 hypothetical protein. (218 aa)    
Predicted Functional Partners:
bamD
DNA uptake lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
     0.635
Plav_2090
PFAM: protein of unknown function DUF1013; KEGG: bra:BRADO6589 hypothetical protein.
  
     0.498
Plav_3262
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: bbt:BBta_3966 transport protein associated with Fe-S cluster assembly, SufB.
     
 0.485
rpoH
RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
 
   
 0.480
Plav_3260
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: nwi:Nwi_1662 FeS assembly protein SufD.
     
 0.464
Plav_3261
TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_0437 Suf C, ATPase.
     
 0.464
Plav_3263
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mag:amb3029 cysteine sulfinate desulfinase/cysteine desulfurase and related enzyme.
       0.462
Plav_1635
PFAM: Disulphide bond formation protein DsbB; KEGG: rpc:RPC_0627 disulphide bond formation protein DsbB.
 
    0.452
Plav_3259
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
       0.441
Plav_3258
TIGRFAM: FeS assembly SUF system protein; PFAM: protein of unknown function DUF59; KEGG: mlo:mlr0023 hypothetical protein.
       0.440
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.