STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_3317KEGG: mtf:TBFG_11533 hypothetical protein. (313 aa)    
Predicted Functional Partners:
Plav_3311
PFAM: transferase hexapeptide repeat containing protein; KEGG: mbb:BCG_1568c hypothetical protein.
 
     0.810
Plav_3312
PFAM: WbqC-like family protein; KEGG: neu:NE2176 hypothetical protein.
 
  
 0.809
Plav_3310
KEGG: neu:NE2172 SAM (and some other nucleotide) binding motif.
 
     0.802
Plav_3316
PFAM: Phytanoyl-CoA dioxygenase; KEGG: rle:RL0802 putative deoxygenase.
 
    0.750
Plav_3318
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rle:RL0803 hypothetical protein.
 
     0.704
Plav_3323
KEGG: oih:OB2417 hypothetical protein.
 
     0.612
Plav_3320
TIGRFAM: TDP-4-keto-6-deoxy-D-glucose transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: nmu:Nmul_A0288 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
   
 0.545
Plav_0541
TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: reu:Reut_B4228 alpha amylase, catalytic subdomain.
  
  
 0.463
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
      
 0.429
Plav_3385
KEGG: rme:Rmet_2298 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein.
      
 0.429
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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