STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_3350C-methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; Methyltransferase domain protein; C-methyltransferase; KEGG: vei:Veis_4417 C-methyltransferase. (400 aa)    
Predicted Functional Partners:
Plav_3353
TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: sme:SMb21416 putative glucose-1-phosphate cytidylyltransferase protein.
 
  
 0.921
Plav_3346
PFAM: Cephalosporin hydroxylase; KEGG: cbo:CBO2712 hydroxylase.
 
     0.895
Plav_3352
TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sme:SMb21417 putative CDP-glucose 4,6-dehydratase protein.
 
   
 0.895
Plav_3349
PFAM: glycosyl transferase family 2; KEGG: rrs:RoseRS_2382 glycosyl transferase, family 2.
 
  
 0.856
Plav_3348
PFAM: NAD-dependent epimerase/dehydratase; KEGG: sat:SYN_02652 CDP-4-dehydro-6-deoxy-D-gulose 4-reductase.
 
   
 0.831
Plav_3351
PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; KEGG: sme:SMb21428 putative dTDP-4-dehydrorhamnose 3,5-epimerase protein.
 
  
 0.800
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
   0.735
Plav_3347
Methyltransferase; KEGG: cbo:CBO2713 methyltransferase.
 
    
0.676
Plav_3355
PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: rru:Rru_A0428 hypothetical protein.
       0.668
Plav_3357
Beta-ketoacyl synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
  
   0.581
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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