STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_3377PFAM: Cobyrinic acid ac-diamide synthase; KEGG: har:HEAR1969 putative chromosome partitioning related protein. (291 aa)    
Predicted Functional Partners:
Plav_3376
Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: har:HEAR1968 putative CP4-57 prophage; transcriptional acitvator of a P4-like cryptic prophage.
 
     0.902
Plav_3379
KEGG: har:HEAR1971 hypothetical protein.
  
 
 0.897
Plav_3385
KEGG: rme:Rmet_2298 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein.
 
   
 0.843
Plav_3425
KEGG: xcv:XCV2366 hypothetical protein.
  
  
 0.799
Plav_3378
KEGG: har:HEAR1970 hypothetical protein.
       0.792
Plav_3435
Relaxase; PFAM: protein of unknown function DUF1528; Relaxase; KEGG: xfa:XF1753 hypothetical protein.
 
   
 0.785
Plav_3424
KEGG: xcv:XCV2367 hypothetical protein.
 
   
 0.782
Plav_1277
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: sil:SPO0004 chromosome partitioning protein ParB; Belongs to the ParB family.
 
 
 0.773
Plav_3405
PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: har:HEAR1996 putative helicase from plasmid origin.
 
     0.771
Plav_3404
KEGG: ajs:Ajs_1420 hypothetical protein.
  
     0.768
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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