STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_3425KEGG: xcv:XCV2366 hypothetical protein. (254 aa)    
Predicted Functional Partners:
Plav_3424
KEGG: xcv:XCV2367 hypothetical protein.
 
   
 0.942
Plav_3414
KEGG: har:HEAR2005 hypothetical protein.
 
     0.864
Plav_3412
PFAM: Lytic transglycosylase catalytic; KEGG: bxe:Bxe_A1197 hypothetical protein.
 
     0.855
Plav_3377
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: har:HEAR1969 putative chromosome partitioning related protein.
  
  
 0.799
Plav_3435
Relaxase; PFAM: protein of unknown function DUF1528; Relaxase; KEGG: xfa:XF1753 hypothetical protein.
 
  
 0.793
Plav_3422
KEGG: rme:Rmet_2351 putative secreted protein.
  
  
 0.768
Plav_3404
KEGG: ajs:Ajs_1420 hypothetical protein.
  
     0.766
Plav_3405
PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: har:HEAR1996 putative helicase from plasmid origin.
 
     0.762
Plav_3419
KEGG: bxe:Bxe_A1189 hypothetical protein.
       0.761
Plav_3420
KEGG: xcb:XC_2035 hypothetical protein.
       0.761
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.