STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_3429KEGG: rme:Rmet_2358 hypothetical protein. (464 aa)    
Predicted Functional Partners:
Plav_3428
PFAM: protein of unknown function DUF1527; KEGG: bxe:Bxe_A1180 hypothetical protein.
      0.926
Plav_3427
PFAM: protein of unknown function DUF1525; KEGG: har:HEAR2023 hypothetical protein.
      0.921
Plav_3430
KEGG: ajs:Ajs_1250 hypothetical protein.
       0.792
Plav_3431
KEGG: ajs:Ajs_1391 hypothetical protein.
       0.761
Plav_3426
PFAM: DNA repair protein RadC; KEGG: har:HEAR2022 putative DNA repair protein, RadC family DNA repair protein; CP4-6 prophage.
  
    0.501
Plav_3419
KEGG: bxe:Bxe_A1189 hypothetical protein.
       0.405
Plav_3420
KEGG: xcb:XC_2035 hypothetical protein.
       0.405
Plav_3421
KEGG: xcv:XCV2370 putative secreted protein.
       0.405
Plav_3422
KEGG: rme:Rmet_2351 putative secreted protein.
       0.405
Plav_3423
KEGG: har:HEAR2019 conserved hypothetical protein; putative signal peptide.
       0.405
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.