STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_3462Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rme:Rmet_2400 transcriptional regulator, LysR family. (296 aa)    
Predicted Functional Partners:
Plav_3463
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rme:Rmet_2401 transcriptional regulator, XRE family.
  
  
 0.656
Plav_2223
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rru:Rru_A2257 transcriptional regulator, LysR family.
  
     0.645
Plav_3434
TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: ajs:Ajs_1246 transcriptional regulator, AbrB family.
  
     0.620
Plav_1268
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bte:BTH_I0383 glycine cleavage system transcriptional activator.
  
     0.610
Plav_0822
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pde:Pden_4581 transcriptional regulator, LysR family.
  
     0.575
Plav_3405
PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: har:HEAR1996 putative helicase from plasmid origin.
  
     0.547
Plav_1964
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: bra:BRADO6238 glutamate synthase [NADPH] large chain (NADPH-GOGAT).
  
  
 0.529
Plav_3404
KEGG: ajs:Ajs_1420 hypothetical protein.
  
     0.523
Plav_3424
KEGG: xcv:XCV2367 hypothetical protein.
  
     0.517
Plav_3435
Relaxase; PFAM: protein of unknown function DUF1528; Relaxase; KEGG: xfa:XF1753 hypothetical protein.
  
  
 0.514
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.