STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_3489KEGG: mlo:mlr3986 hypothetical protein. (108 aa)    
Predicted Functional Partners:
Plav_3490
Transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; KEGG: rpa:RPA0326 DUF24, predicted transcriptional regulator, related to MarR family.
 
     0.657
Plav_2823
KEGG: rle:pRL120290 hypothetical protein.
 
   
 0.569
Plav_0839
PFAM: protein of unknown function DUF1214; KEGG: afu:AF2163 hypothetical protein.
  
     0.440
Plav_0842
PFAM: protein of unknown function DUF1254; KEGG: nar:Saro_2217 integral membrane protein-like.
  
     0.413
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.