STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_3517KEGG: pde:Pden_1533 probable methylase/helicase. (1439 aa)    
Predicted Functional Partners:
Plav_3518
KEGG: bbt:BBta_7718 hypothetical protein.
     0.943
Plav_3519
KEGG: pde:Pden_1531 hypothetical protein.
 
     0.856
Plav_3513
PFAM: ParB domain protein nuclease; KEGG: pde:Pden_1541 ParB-like partition proteins.
 
     0.831
Plav_1216
KEGG: pde:Pden_1531 hypothetical protein.
 
     0.773
Plav_1222
PFAM: ParB domain protein nuclease; KEGG: pde:Pden_1541 ParB-like partition proteins.
 
     0.761
Plav_1217
KEGG: bbt:BBta_7718 hypothetical protein.
     0.758
Plav_1814
PFAM: domain of unknown function DUF1738; KEGG: mlo:mlr6154 antirestriction protein.
     0.661
Plav_3512
PFAM: domain of unknown function DUF1738; KEGG: bbt:BBta_7394 putative ArdC antirestriction protein.
     0.582
Plav_0315
PFAM: ParB domain protein nuclease; KEGG: swi:Swit_3672 ParB domain protein nuclease.
 
     0.553
Plav_3514
KEGG: pde:Pden_1536 hypothetical protein.
       0.487
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.