STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_3538KEGG: pde:Pden_1507 hypothetical protein. (579 aa)    
Predicted Functional Partners:
Plav_3540
KEGG: bja:bll0042 hypothetical protein.
 
     0.928
Plav_3539
PFAM: TRAG family protein; KEGG: pde:Pden_1506 TraG family protein.
 
   
 0.884
Plav_3535
KEGG: mes:Meso_2333 conjugal transfer protein precursor.
     0.878
Plav_3534
KEGG: bbt:BBta_7734 hypothetical protein.
 
     0.863
Plav_3530
KEGG: pde:Pden_1513 hypothetical protein.
 
     0.861
Plav_3531
KEGG: pde:Pden_1512 replication protein A.
 
     0.857
Plav_3543
KEGG: mlo:mll9611 conjugal transfer protein trbB.
 
     0.845
Plav_3545
TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: pde:Pden_1480 conjugal transfer protein TrbJ.
 
     0.837
Plav_3536
PFAM: protein of unknown function DUF736; KEGG: bbt:BBta_7736 hypothetical protein.
 
     0.835
Plav_1200
KEGG: mes:Meso_2333 conjugal transfer protein precursor.
     0.797
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.