STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_3560PFAM: PglZ domain protein; KEGG: dno:DNO_0176 conserved hypothetical protein VrlP. (678 aa)    
Predicted Functional Partners:
Plav_3559
PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: ace:Acel_0816 helicase domain protein.
 
 
  0.959
Plav_3561
KEGG: dno:DNO_0175 conserved hypothetical protein VrlQ.
     0.954
Plav_3558
KEGG: ace:Acel_0814 hypothetical protein.
 
     0.948
Plav_3555
KEGG: ace:Acel_0812 hypothetical protein.
 
    0.939
Plav_3556
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: mbu:Mbur_0482 divergent AAA ATP.
 
     0.931
Plav_3554
KEGG: dno:DNO_0182 conserved hypothetical protein VrlJ.
 
     0.923
Plav_1176
PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: ace:Acel_0816 helicase domain protein.
 
 
  0.826
Plav_1174
KEGG: dno:DNO_0175 conserved hypothetical protein VrlQ.
     0.809
Plav_1180
KEGG: ace:Acel_0812 hypothetical protein.
 
    0.791
Plav_1177
KEGG: ace:Acel_0814 hypothetical protein.
 
     0.783
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.