STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_3642PFAM: protein of unknown function DUF1058; KEGG: mlo:mll5573 hypothetical protein. (199 aa)    
Predicted Functional Partners:
Plav_3641
PFAM: sulfatase; KEGG: bmb:BruAb2_1121 sulfatase.
       0.773
Plav_2446
PFAM: protein of unknown function DUF1321; KEGG: bbt:BBta_6105 hypothetical protein.
  
     0.664
Plav_2919
PFAM: SmpA/OmlA domain protein; KEGG: nwi:Nwi_1403 SmpA/OmlA.
  
     0.632
Plav_2034
KEGG: bbt:BBta_6866 hypothetical protein; Belongs to the UPF0335 family.
  
     0.573
Plav_3643
Glyoxylate reductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: hne:HNE_3433 glyoxylate reductase.
       0.566
Plav_1694
Transcriptional regulator, CarD family; PFAM: transcription factor CarD; KEGG: rpd:RPD_0278 transcription factor CarD.
  
     0.565
Plav_1370
PFAM: protein of unknown function YGGT; KEGG: rru:Rru_A3527 protein of unknown function YGGT.
  
     0.564
Plav_2090
PFAM: protein of unknown function DUF1013; KEGG: bra:BRADO6589 hypothetical protein.
  
     0.550
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.547
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.504
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.