STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_3648PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rxy:Rxyl_3013 short-chain dehydrogenase/reductase SDR. (233 aa)    
Predicted Functional Partners:
Plav_3647
KEGG: rpe:RPE_0758 hypothetical protein.
       0.746
Plav_3649
PFAM: DSBA oxidoreductase; KEGG: pau:PA14_01440 putative 2-hydroxychromene-2-carboxylate isomerase.
 
    0.741
Plav_3650
PFAM: DSBA oxidoreductase; KEGG: bbt:BBta_5151 hypothetical protein.
 
    0.729
Plav_3651
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pau:PA14_01430 putative short chain dehydrogenase.
 
    
0.676
Plav_1566
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: reu:Reut_A3281 short chain dehydrogenase.
  
 
 
 0.607
Plav_3646
PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: rpc:RPC_0364 UBA/ThiF-type NAD/FAD binding fold.
       0.607
Plav_0548
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpd:RPD_3208 short-chain dehydrogenase/reductase SDR.
  
 
 
 0.566
Plav_2089
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mes:Meso_3434 short-chain dehydrogenase/reductase SDR.
  
 
 
 0.548
Plav_1137
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mva:Mvan_3997 short-chain dehydrogenase/reductase SDR.
  
 
 
 0.541
Plav_0923
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mgi:Mflv_0296 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
 0.539
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.