STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PITC_039990PUM-HD domain-containing protein. (696 aa)    
Predicted Functional Partners:
PITC_006450
Major facilitator superfamily domain, general substrate transporter.
   
 
 0.989
PITC_021620
Nop2p; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.987
PITC_023030
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.985
PITC_069910
Nucleotide-binding, alpha-beta plait.
   
   0.984
PITC_019660
Eukaryotic rRNA processing.
   
 
 0.977
PITC_033450
Ribosomal protein L1.
   
 
 0.968
PITC_070040
Nucleotide-binding, alpha-beta plait.
   
 
 0.966
PITC_009920
Anticodon-binding.
   
 
 0.966
PITC_099120
Helicase, C-terminal; Belongs to the DEAD box helicase family.
   
 
 0.966
PITC_009930
Uncharacterized protein.
   
 
 0.966
Your Current Organism:
Penicillium italicum
NCBI taxonomy Id: 40296
Other names: CBS 339.48, P. italicum
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