STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PITC_037840Rtf2 domain-containing protein. (334 aa)    
Predicted Functional Partners:
PITC_090420
tRNA (Guanine(26)-N(2))-dimethyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.
    
   0.576
PITC_083890
CWC16 protein.
  
   
 0.557
PITC_067220
Plus-3.
      
 0.432
PITC_029490
Nuclear protein DGCR14.
      
 0.424
PITC_031740
Prp18.
      
 0.422
PITC_041450
Uncharacterized protein.
      
 0.407
Your Current Organism:
Penicillium italicum
NCBI taxonomy Id: 40296
Other names: CBS 339.48, P. italicum
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