STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PITC_088440Chalcone isomerase. (419 aa)    
Predicted Functional Partners:
PITC_077990
Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.
   
 0.949
PITC_090870
Zinc finger, RING-type.
    
 0.947
PITC_079400
RecF/RecN/SMC.
    
 0.938
PITC_054040
RecF/RecN/SMC.
    
 0.937
PITC_095930
Zinc finger, RING/FYVE/PHD-type.
    
 0.937
PITC_059750
Structural maintenance of chromosomes protein.
    
 0.801
PITC_062890
Structural maintenance of chromosomes protein.
   
 0.722
PITC_062880
Uncharacterized protein.
   
 0.722
PITC_096950
Structural maintenance of chromosomes protein.
    
 0.696
PITC_002600
Structural maintenance of chromosomes protein.
    
 0.696
Your Current Organism:
Penicillium italicum
NCBI taxonomy Id: 40296
Other names: CBS 339.48, P. italicum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.