STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJE39365.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (139 aa)    
Predicted Functional Partners:
AJE42903.1
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.664
AJE40046.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.546
secY
Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.546
AJE39364.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.497
AJE40944.1
Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.441
AJE38805.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  0.435
AJE38844.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.435
AJE38969.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.435
sti
Protease inhibitor protein; Strong inhibitor of bacterial serine proteases such as subtilisin.
   
  0.435
AJE39340.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.435
Your Current Organism:
Streptomyces nodosus
NCBI taxonomy Id: 40318
Other names: ATCC 14899, ATCC 23942, BCRC 13768, CBS 926.68, CCRC 13768, CCRC:13768, DSM 40109, IFO 12895, ISP 5109, JCM 4297, JCM 4656, KCTC 9035, LMG 19340, LMG:19340, NBRC 12895, NCIMB 12816, NRRL B-2371, NRRL-ISP 5109, RIA 831, S. nodosus
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