STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJE39988.1Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (696 aa)    
Predicted Functional Partners:
AJE42842.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.980
AJE42705.1
Heat shock protein 90; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.967
AJE40125.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.964
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.954
AJE39206.1
alanyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.939
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.939
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 0.938
AJE41181.1
Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.936
AJE40855.1
WD40 repeat, subgroup; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.931
AJE44332.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.927
Your Current Organism:
Streptomyces nodosus
NCBI taxonomy Id: 40318
Other names: ATCC 14899, ATCC 23942, BCRC 13768, CBS 926.68, CCRC 13768, CCRC:13768, DSM 40109, IFO 12895, ISP 5109, JCM 4297, JCM 4656, KCTC 9035, LMG 19340, LMG:19340, NBRC 12895, NCIMB 12816, NRRL B-2371, NRRL-ISP 5109, RIA 831, S. nodosus
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