STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJE40172.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)    
Predicted Functional Partners:
AJE41573.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.660
AJE40257.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.651
AJE43781.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.632
AJE40329.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.591
AJE43497.1
Toxin-antitoxin system, toxin component; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.588
whiA
Sporulation protein; Involved in cell division and chromosome segregation.
       0.577
AJE40169.1
Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
       0.577
AJE40170.1
glmZ(sRNA)-inactivating NTPase; Displays ATPase and GTPase activities.
       0.577
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.577
AJE40175.1
Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.574
Your Current Organism:
Streptomyces nodosus
NCBI taxonomy Id: 40318
Other names: ATCC 14899, ATCC 23942, BCRC 13768, CBS 926.68, CCRC 13768, CCRC:13768, DSM 40109, IFO 12895, ISP 5109, JCM 4297, JCM 4656, KCTC 9035, LMG 19340, LMG:19340, NBRC 12895, NCIMB 12816, NRRL B-2371, NRRL-ISP 5109, RIA 831, S. nodosus
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