Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AJE43267.1Gas vesicle protein GvpJ; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. (118 aa)    
Predicted Functional Partners:
AJE43270.1
Gas vesicle protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.974
AJE43268.1
Gas vesicle protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.970
AJE43269.1
Gas vesicle protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.970
AJE43266.1
Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.960
AJE43265.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.950
gvpA
Gas vesicle synthesis-like protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
 
   
 0.945
AJE43264.1
Gas vesicle protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.945
AJE43262.1
Gas vesicle protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.928
AJE43260.1
NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.624
AJE43261.1
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.624
Your Current Organism:
Streptomyces nodosus
NCBI taxonomy Id: 40318
Other names: ATCC 14899, ATCC 23942, BCRC 13768, CBS 926.68, CCRC 13768, CCRC:13768, DSM 40109, IFO 12895, ISP 5109, JCM 4297, JCM 4656, KCTC 9035, LMG 19340, LMG:19340, NBRC 12895, NCIMB 12816, NRRL B-2371, NRRL-ISP 5109, RIA 831, S. nodosus
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