STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJE43812.1Peptidase M23B; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)    
Predicted Functional Partners:
AJE43808.1
Baseplate J family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
AJE43809.1
Baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.997
AJE43813.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.997
AJE43817.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.997
AJE43816.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.988
AJE42199.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
   0.978
AJE43811.1
Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.971
AJE43807.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.955
AJE43810.1
PaaR repeat-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.947
AJE43815.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.933
Your Current Organism:
Streptomyces nodosus
NCBI taxonomy Id: 40318
Other names: ATCC 14899, ATCC 23942, BCRC 13768, CBS 926.68, CCRC 13768, CCRC:13768, DSM 40109, IFO 12895, ISP 5109, JCM 4297, JCM 4656, KCTC 9035, LMG 19340, LMG:19340, NBRC 12895, NCIMB 12816, NRRL B-2371, NRRL-ISP 5109, RIA 831, S. nodosus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.