cspE protein (Legionella tucsonensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Legionella tucsonensis

NCBI taxonomy Id: 40335
Other names: ATCC 49180, CCUG 31119, CIP 105113, DSM 19246, L. tucsonensis, NCTC 12439

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ltuc_0121	cspE	Ltuc_0121	Ltuc_0641	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	DNA-binding transcriptional repressor.	0.513
Ltuc_0121	rpmC	Ltuc_0121	Ltuc_2446	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.667
Ltuc_0121	rpsL	Ltuc_0121	Ltuc_2501	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.667
Ltuc_0121	rpsQ	Ltuc_0121	Ltuc_2445	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.667
Ltuc_0121	rpsS	Ltuc_0121	Ltuc_2450	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.667
Ltuc_0640	cspE	Ltuc_0640	Ltuc_0641	RNA binding protein, cold-inducible rrm.	DNA-binding transcriptional repressor.	0.826
Ltuc_0640	dbpA	Ltuc_0640	Ltuc_0639	RNA binding protein, cold-inducible rrm.	ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family.	0.767
cspE	Ltuc_0121	Ltuc_0641	Ltuc_0121	DNA-binding transcriptional repressor.	Ribonuclease T2 family protein; Belongs to the RNase T2 family.	0.513
cspE	Ltuc_0640	Ltuc_0641	Ltuc_0640	DNA-binding transcriptional repressor.	RNA binding protein, cold-inducible rrm.	0.826
cspE	dbpA	Ltuc_0641	Ltuc_0639	DNA-binding transcriptional repressor.	ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family.	0.577
cspE	rplO	Ltuc_0641	Ltuc_2435	DNA-binding transcriptional repressor.	50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.408
cspE	rpmC	Ltuc_0641	Ltuc_2446	DNA-binding transcriptional repressor.	50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.420
cspE	rpsL	Ltuc_0641	Ltuc_2501	DNA-binding transcriptional repressor.	30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.466
cspE	rpsQ	Ltuc_0641	Ltuc_2445	DNA-binding transcriptional repressor.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.440
cspE	rpsS	Ltuc_0641	Ltuc_2450	DNA-binding transcriptional repressor.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.439
dbpA	Ltuc_0640	Ltuc_0639	Ltuc_0640	ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family.	RNA binding protein, cold-inducible rrm.	0.767
dbpA	cspE	Ltuc_0639	Ltuc_0641	ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family.	DNA-binding transcriptional repressor.	0.577
dbpA	rplO	Ltuc_0639	Ltuc_2435	ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family.	50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.591
dbpA	rpmC	Ltuc_0639	Ltuc_2446	ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family.	50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.457
dbpA	rpsL	Ltuc_0639	Ltuc_2501	ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family.	30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.473