Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ltuc_0477 | Ltuc_0801 | Ltuc_0477 | Ltuc_0801 | Polyketide synthase. | Coiled-coil protein. | 0.824 |
Ltuc_0477 | Ltuc_2001 | Ltuc_0477 | Ltuc_2001 | Polyketide synthase. | Ankyrin repeats (3 copies). | 0.990 |
Ltuc_0477 | Ltuc_2146 | Ltuc_0477 | Ltuc_2146 | Polyketide synthase. | Tfp pilus assembly protein PilX. | 0.706 |
Ltuc_0477 | Ltuc_2472 | Ltuc_0477 | Ltuc_2472 | Polyketide synthase. | Hypothetical protein. | 0.749 |
Ltuc_0477 | Ltuc_2568 | Ltuc_0477 | Ltuc_2568 | Polyketide synthase. | Phosphotransferase enzyme family protein. | 0.758 |
Ltuc_0801 | Ltuc_0477 | Ltuc_0801 | Ltuc_0477 | Coiled-coil protein. | Polyketide synthase. | 0.824 |
Ltuc_0801 | Ltuc_0802 | Ltuc_0801 | Ltuc_0802 | Coiled-coil protein. | Hypothetical protein. | 0.880 |
Ltuc_0801 | Ltuc_2001 | Ltuc_0801 | Ltuc_2001 | Coiled-coil protein. | Ankyrin repeats (3 copies). | 0.774 |
Ltuc_0801 | Ltuc_2146 | Ltuc_0801 | Ltuc_2146 | Coiled-coil protein. | Tfp pilus assembly protein PilX. | 0.770 |
Ltuc_0801 | Ltuc_2472 | Ltuc_0801 | Ltuc_2472 | Coiled-coil protein. | Hypothetical protein. | 0.774 |
Ltuc_0801 | Ltuc_2568 | Ltuc_0801 | Ltuc_2568 | Coiled-coil protein. | Phosphotransferase enzyme family protein. | 0.770 |
Ltuc_0801 | secB | Ltuc_0801 | Ltuc_1785 | Coiled-coil protein. | Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. | 0.883 |
Ltuc_0801 | secE | Ltuc_0801 | Ltuc_2509 | Coiled-coil protein. | Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation; Belongs to the SecE/SEC61-gamma family. | 0.795 |
Ltuc_0801 | secG | Ltuc_0801 | Ltuc_0035 | Coiled-coil protein. | Protein-export membrane protein secG (preprotein translocase subunit); Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 0.880 |
Ltuc_0801 | secY | Ltuc_0801 | Ltuc_2434 | Coiled-coil protein. | Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.884 |
Ltuc_0802 | Ltuc_0801 | Ltuc_0802 | Ltuc_0801 | Hypothetical protein. | Coiled-coil protein. | 0.880 |
Ltuc_2001 | Ltuc_0477 | Ltuc_2001 | Ltuc_0477 | Ankyrin repeats (3 copies). | Polyketide synthase. | 0.990 |
Ltuc_2001 | Ltuc_0801 | Ltuc_2001 | Ltuc_0801 | Ankyrin repeats (3 copies). | Coiled-coil protein. | 0.774 |
Ltuc_2001 | Ltuc_2146 | Ltuc_2001 | Ltuc_2146 | Ankyrin repeats (3 copies). | Tfp pilus assembly protein PilX. | 0.772 |
Ltuc_2001 | Ltuc_2472 | Ltuc_2001 | Ltuc_2472 | Ankyrin repeats (3 copies). | Hypothetical protein. | 0.774 |
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