Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lspJType II secretory pathway protein LspJ. (211 aa)    
Predicted Functional Partners:
lspK
Type II secretory pathway protein LspK.
 
 
 0.999
lspI
Type II secretory pathway protein LspI.
 
 0.999
lspH
Type II secretory pathway protein LspH.
 
 0.996
lspG
Type II secretory pathway protein LspG.
 
 0.995
lspD
Type II protein secretion LspD.
 
  
 0.977
lspF
Type II secretory pathway protein LspF.
 
  
 0.966
Ltuc_0862
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.876
Ltuc_0861
General secretion pathway protein.
 
  
 0.810
Ltuc_0609
General secretion pathway protein C.
 
  
 0.795
lspE
Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.790
Your Current Organism:
Legionella tucsonensis
NCBI taxonomy Id: 40335
Other names: ATCC 49180, CCUG 31119, CIP 105113, DSM 19246, L. tucsonensis, NCTC 12439
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