STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ltuc_09541-aminocyclopropane-1-carboxylate deaminase. (300 aa)    
Predicted Functional Partners:
Ltuc_0953
Hypothetical protein; Belongs to the UPF0246 family.
       0.748
Ltuc_0952
Hypothetical protein.
       0.708
glnA
Glutamine synthetase.
       0.692
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
  
  0.673
Ltuc_0772
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.657
metB
Cystathionine beta-lyase.
     
 0.621
htpG
Class III heat-shock protein HtpG(molecular chaperone); Molecular chaperone. Has ATPase activity.
       0.586
iraA
Small-molecule methyltransferase IraA.
  
  
  0.567
lspF
Type II secretory pathway protein LspF.
       0.530
aph
Spectinomycin phosphotransferase.
  
     0.498
Your Current Organism:
Legionella tucsonensis
NCBI taxonomy Id: 40335
Other names: ATCC 49180, CCUG 31119, CIP 105113, DSM 19246, L. tucsonensis, NCTC 12439
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