Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilOTfp pilus assembly protein PilO. (199 aa)    
Predicted Functional Partners:
pilN
Tfp pilus assembly protein PilN.
 
 
 0.999
pilP
Tfp pilus assembly protein PilP.
 
  
 0.997
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
 
 
 0.995
pilM
Tfp pilus assembly protein, ATPase PilM.
 
 
 0.995
Ltuc_1711
LysM domain-containing protein.
  
   0.894
pilE_2
Type-IV pilin.
 
  
 0.852
pilZ_2
Type 4 fimbrial biogenesis protein PilZ.
  
   
 0.827
fimV
FimV protein.
  
  
 0.789
Ltuc_2764
Type IV fimbrial biogenesis PilY1-like protein.
  
  
 0.752
Ltuc_2144
Pre-pilin leader sequence (pilV).
 
   
 0.749
Your Current Organism:
Legionella tucsonensis
NCBI taxonomy Id: 40335
Other names: ATCC 49180, CCUG 31119, CIP 105113, DSM 19246, L. tucsonensis, NCTC 12439
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