Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ltuc_1908Hypothetical protein. (418 aa)    
Predicted Functional Partners:
Ltuc_1909
PAP2 family protein.
       0.786
etfA
Electron transfer flavoprotein, alpha subunit.
       0.699
etfB
Electron transfer flavoprotein beta-subunit (Beta-ETF).
       0.689
Ltuc_1910
Aminoacid/polyamine transporter.
       0.628
ald
Alanine dehydrogenase; Belongs to the AlaDH/PNT family.
       0.551
galU
Glucose-1-phosphate uridylyltransferase.
       0.523
Your Current Organism:
Legionella tucsonensis
NCBI taxonomy Id: 40335
Other names: ATCC 49180, CCUG 31119, CIP 105113, DSM 19246, L. tucsonensis, NCTC 12439
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