Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ltuc_1996Hypothetical protein. (211 aa)    
Predicted Functional Partners:
Ltuc_0223
Sensory box histidine kinase/response regulator.
    
 0.804
Ltuc_2044
Sensory histidine-kinase / response regulator.
    
 0.804
letS_1
Legionella transmission sensor LetS.
     
 0.803
Ltuc_0577
IcmL-like protein.
  
    0.768
Ltuc_0858
Coiled-coil protein.
  
     0.762
Ltuc_2857
Ankyrin repeats (3 copies).
  
     0.762
Ltuc_1895
DamX-related protein.
  
     0.760
iraA
Small-molecule methyltransferase IraA.
  
     0.743
Ltuc_0932
Hypothetical protein.
  
     0.742
Ltuc_2251
Ankyrin repeat protein.
  
     0.740
Your Current Organism:
Legionella tucsonensis
NCBI taxonomy Id: 40335
Other names: ATCC 49180, CCUG 31119, CIP 105113, DSM 19246, L. tucsonensis, NCTC 12439
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