Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
Ltuc_2145Tfp pilus assembly protein PilW. (355 aa)    
Predicted Functional Partners:
Ltuc_2146
Tfp pilus assembly protein PilX.
 
  
 0.996
Ltuc_2144
Pre-pilin leader sequence (pilV).
 
  
 0.994
Ltuc_2143
Type IV pre-pilin.
 
  
 0.989
Ltuc_2764
Type IV fimbrial biogenesis PilY1-like protein.
 
  
 0.989
pilE_2
Type-IV pilin.
 
  
 0.984
Ltuc_2001
Ankyrin repeats (3 copies).
  
    0.771
Ltuc_2142
Polysaccharide deacetylase domain-containing protein.
       0.769
Ltuc_0801
Coiled-coil protein.
  
     0.766
Ltuc_2472
Hypothetical protein.
 
    0.761
Ltuc_1605
GNAT family acetyltransferase.
  
     0.733
Your Current Organism:
Legionella tucsonensis
NCBI taxonomy Id: 40335
Other names: ATCC 49180, CCUG 31119, CIP 105113, DSM 19246, L. tucsonensis, NCTC 12439
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