Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
pilE_2Type-IV pilin. (141 aa)    
Predicted Functional Partners:
Ltuc_2144
Pre-pilin leader sequence (pilV).
 
  
 0.990
Ltuc_2145
Tfp pilus assembly protein PilW.
 
  
 0.984
Ltuc_2143
Type IV pre-pilin.
 
  
 0.982
Ltuc_2764
Type IV fimbrial biogenesis PilY1-like protein.
 
  
 0.972
Ltuc_2146
Tfp pilus assembly protein PilX.
 
  
 0.969
pilM
Tfp pilus assembly protein, ATPase PilM.
 
   
 0.890
pilN
Tfp pilus assembly protein PilN.
 
  
 0.859
pilO
Tfp pilus assembly protein PilO.
 
  
 0.852
pilP
Tfp pilus assembly protein PilP.
  
  
 0.845
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
 
   
 0.836
Your Current Organism:
Legionella tucsonensis
NCBI taxonomy Id: 40335
Other names: ATCC 49180, CCUG 31119, CIP 105113, DSM 19246, L. tucsonensis, NCTC 12439
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