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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ltuc_2148DNA internalization-related competence protein ComEC/Rec2. (693 aa)    
Predicted Functional Partners:
comF
Competence protein ComF.
 
  
 0.889
smf
Protein smf.
 
  
 0.885
pilD
Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.793
pilC
Pilus assembly protein PilC.
  
  
 0.783
lspF
Type II secretory pathway protein LspF.
   
  
 0.753
Ltuc_2149
Ada protein (O6-methylguanine-DNA methyltransferase).
     
 0.720
Ltuc_2144
Pre-pilin leader sequence (pilV).
     
 0.693
Ltuc_0223
Sensory box histidine kinase/response regulator.
  
  
 0.683
Ltuc_2044
Sensory histidine-kinase / response regulator.
  
  
 0.683
Ltuc_2143
Type IV pre-pilin.
 
   
 0.683
Your Current Organism:
Legionella tucsonensis
NCBI taxonomy Id: 40335
Other names: ATCC 49180, CCUG 31119, CIP 105113, DSM 19246, L. tucsonensis, NCTC 12439
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