Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ltuc_2154Putative globin-like protein. (130 aa)    
Predicted Functional Partners:
Ltuc_2155
Hypothetical protein.
       0.877
cydA
Cytochrome d ubiquinol oxidase subunit I.
       0.768
cydB
Cytochrome d ubiquinol oxidase subunit II.
       0.762
Ltuc_2153
Transcriptional regulator.
 
    0.531
Ltuc_0223
Sensory box histidine kinase/response regulator.
     
  0.511
Ltuc_2044
Sensory histidine-kinase / response regulator.
     
  0.511
Ltuc_0367
Chemotaxis histidine kinase.
    
  0.508
letS_2
Legionella transmission sensor LetS.
    
  0.499
letS_1
Legionella transmission sensor LetS.
     
  0.475
Ltuc_1101
Response regulator.
     
  0.434
Your Current Organism:
Legionella tucsonensis
NCBI taxonomy Id: 40335
Other names: ATCC 49180, CCUG 31119, CIP 105113, DSM 19246, L. tucsonensis, NCTC 12439
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