Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ltuc_2158Hypothetical protein. (423 aa)    
Predicted Functional Partners:
Ltuc_2159
Hypothetical protein.
       0.658
enhA_2
Enhanced entry protein EnhA.
 
     0.451
lptC
Lipopolysaccharide export system protein LptC.
  
     0.446
Ltuc_0576
Enhanced entry protein EnhA.
 
     0.441
Ltuc_1383
Enhanced entry protein EnhA.
 
     0.439
Ltuc_2325
IcmJ protein.
  
     0.437
Ltuc_2642
Hypothetical protein.
 
     0.419
Ltuc_2329
Protein IcmE (DotG).
  
     0.417
dotA
Defect in organelle trafficking protein DotA.
  
     0.415
Your Current Organism:
Legionella tucsonensis
NCBI taxonomy Id: 40335
Other names: ATCC 49180, CCUG 31119, CIP 105113, DSM 19246, L. tucsonensis, NCTC 12439
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