Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sdaCSerine transporter. (431 aa)    
Predicted Functional Partners:
Ltuc_1725
DNA-binding protein; Belongs to the Dps family.
    
   0.776
Ltuc_2130
Ferritin; Belongs to the Dps family.
    
   0.776
Ltuc_1893
Hypothetical protein.
  
     0.634
bcsB
Cyclic di-GMP-binding protein precursor; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
  
 
   0.596
bcsC
Cellulose synthase operon protein C precursor.
  
     0.596
parB_2
Partition protein ParB; Belongs to the ParB family.
       0.574
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
       0.513
Ltuc_2182
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.
 
     0.488
sdhL
L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
  
  
 0.458
Ltuc_2177
GTP cyclohydrolase II.
       0.435
Your Current Organism:
Legionella tucsonensis
NCBI taxonomy Id: 40335
Other names: ATCC 49180, CCUG 31119, CIP 105113, DSM 19246, L. tucsonensis, NCTC 12439
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