STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ltuc_2286Type II/III secretion system protein. (247 aa)    
Predicted Functional Partners:
Ltuc_0609
General secretion pathway protein C.
 
 
 0.959
pilZ_1
Type IV pilus assembly PilZ.
  
     0.769
fliH
Polar flagellar assembly protein FliH.
 
  
 0.764
iraA
Small-molecule methyltransferase IraA.
  
     0.750
Ltuc_1895
DamX-related protein.
 
     0.748
Ltuc_0932
Hypothetical protein.
  
     0.737
Ltuc_0858
Coiled-coil protein.
  
     0.736
Ltuc_1485
Hypothetical protein.
  
     0.734
Ltuc_1996
Hypothetical protein.
  
     0.734
Ltuc_2857
Ankyrin repeats (3 copies).
  
     0.730
Your Current Organism:
Legionella tucsonensis
NCBI taxonomy Id: 40335
Other names: ATCC 49180, CCUG 31119, CIP 105113, DSM 19246, L. tucsonensis, NCTC 12439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.