STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDEG_2023618S rRNA biogenesis protein RCL1. (378 aa)    
Predicted Functional Partners:
BDEG_25229
Uncharacterized protein.
   
 0.999
BDEG_22913
WD_REPEATS_REGION domain-containing protein.
   
 0.997
BDEG_28205
WD_REPEATS_REGION domain-containing protein.
   
 0.996
BDEG_20921
WD_REPEATS_REGION domain-containing protein.
   
 
 0.995
BDEG_25706
BP28CT domain-containing protein.
   
 0.995
BDEG_26338
Uncharacterized protein.
   
 
 0.995
BDEG_25377
Brix domain-containing protein.
   
 
 0.994
BDEG_27103
ANAPC4_WD40 domain-containing protein.
   
 0.993
BDEG_21190
WD_REPEATS_REGION domain-containing protein.
   
 
 0.992
BDEG_20155
Uncharacterized protein.
   
 
 0.991
Your Current Organism:
Batrachochytrium dendrobatidis JEL423
NCBI taxonomy Id: 403673
Other names: B. dendrobatidis JEL423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.