STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDEG_23911TAFII28 domain-containing protein. (287 aa)    
Predicted Functional Partners:
BDEG_25700
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.994
BDEG_22556
TFIID_20kDa domain-containing protein.
    
 0.993
BDEG_22710
Uncharacterized protein.
   
 0.993
BDEG_22862
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
 0.993
BDEG_24739
SGF29 C-terminal domain-containing protein.
    
 0.993
BDEG_27059
Bromo domain-containing protein.
    
 0.993
BDEG_20543
Uncharacterized protein.
    
 0.992
BDEG_21845
Uncharacterized protein.
    
 0.992
BDEG_27542
TAF domain-containing protein.
    
 0.992
BDEG_24029
AAA domain-containing protein.
    
 0.990
Your Current Organism:
Batrachochytrium dendrobatidis JEL423
NCBI taxonomy Id: 403673
Other names: B. dendrobatidis JEL423
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