STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDEG_24880Uncharacterized protein; Belongs to the pirin family. (298 aa)    
Predicted Functional Partners:
BDEG_25283
Uncharacterized protein.
  
 0.811
BDEG_28175
Uncharacterized protein.
    
 0.805
BDEG_21325
Uncharacterized protein.
   
 0.762
BDEG_24988
Indole-3-glycerol phosphate synthase.
   
 
 0.696
BDEG_20019
23S rRNA methyltransferase.
    
 0.634
BDEG_20312
Uncharacterized protein.
    
 0.634
BDEG_21610
Protein kinase domain-containing protein.
    
 0.634
BDEG_23661
F-box domain-containing protein.
    
 0.634
BDEG_26628
3-phosphoshikimate 1-carboxyvinyltransferase; The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis. In the 2nd section; belongs to the EPSP synthase family. In the 4th section; belongs to the type-I 3-dehydroquinase family. In the N-terminal section; belongs to the dehydroquinate synthase family.
   
 0.605
BDEG_20623
Uncharacterized protein.
   
 0.553
Your Current Organism:
Batrachochytrium dendrobatidis JEL423
NCBI taxonomy Id: 403673
Other names: B. dendrobatidis JEL423
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