STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDEG_24821Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family. (198 aa)    
Predicted Functional Partners:
BDEG_26545
Ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.
    
 
 0.937
BDEG_24246
Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
    
   0.918
BDEG_23982
Ribosomal protein S16.
  
   0.894
BDEG_20934
Ribosomal L28 family protein.
  
   0.893
BDEG_24718
Ribosomal protein S6.
   
   0.892
BDEG_20773
2-oxoisovalerate dehydrogenase subunit alpha; The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
  
 
 0.889
BDEG_20799
Ribosomal protein S9/S16; Belongs to the universal ribosomal protein uS9 family.
  
   0.885
BDEG_23047
Methionyl-tRNA formyltransferase.
  
 0.885
BDEG_24324
30S ribosomal protein S13.
   
   0.881
BDEG_26208
Ribosomal protein L19.
  
   0.878
Your Current Organism:
Batrachochytrium dendrobatidis JEL423
NCBI taxonomy Id: 403673
Other names: B. dendrobatidis JEL423
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.