STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDEG_26333Uncharacterized protein. (1139 aa)    
Predicted Functional Partners:
BDEG_21072
Uncharacterized protein.
  
 0.995
BDEG_28017
Tyrosine--tRNA ligase.
  
 0.943
SLX1
Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA.
   
 0.915
BDEG_23065
ERCC4 domain-containing protein.
  
 0.915
BDEG_24898
60S ribosomal protein L44; Belongs to the eukaryotic ribosomal protein eL42 family.
   
 0.887
BDEG_21175
Proline-tRNA ligase.
  
 0.878
BDEG_26442
ERCC4 domain-containing protein.
  
 0.854
BDEG_21118
Leucine-tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.804
BDEG_20225
Isoleucine-tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.802
BDEG_20548
Glutamate-tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.783
Your Current Organism:
Batrachochytrium dendrobatidis JEL423
NCBI taxonomy Id: 403673
Other names: B. dendrobatidis JEL423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.