STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PITG_07293CCHC-type domain-containing protein. (432 aa)    
Predicted Functional Partners:
PITG_05318
N-(5'-phosphoribosyl)anthranilate isomerase indole-3-glycerol-phosphate synthase, putative.
  
  
 0.563
PITG_12877
DNA-directed RNA polymerase I, II, and III subunit RPABC2, putative.
   
 
 0.514
PITG_12285
Polypyrimidine tract-binding protein, putative.
    
 0.511
PITG_07306
U11/U12 small nuclear ribonucleoprotein 35 kDa protein, putative.
  
 0.507
PITG_00863
DEAD/DEAH box RNA helicase, putative; Belongs to the DEAD box helicase family.
  
 0.499
PITG_12947
40S ribosomal protein S23, putative.
   
 
 0.496
PITG_05666
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.491
PITG_09488
Small nuclear ribonucleoprotein Sm D3.
   
 0.486
PITG_14914
Small nuclear ribonucleoprotein Sm D3.
   
 0.486
PITG_23192
Small nuclear ribonucleoprotein F, putative.
    
  0.483
Your Current Organism:
Phytophthora infestans
NCBI taxonomy Id: 403677
Other names: P. infestans T30-4, Phytophthora infestans T30-4, Phytophthora infestans strain T30-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.