STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PITG_08886DEAD/DEAH box RNA helicase, putative. (2164 aa)    
Predicted Functional Partners:
PITG_04453
CUE domain-containing protein.
    
 0.976
PITG_10969
Pre-mRNA-processing-splicing factor 8.
   
 0.948
PITG_12178
Uncharacterized protein.
    
 
 0.939
PITG_09956
Pre-mRNA-processing factor, putative.
   
 0.904
PITG_23192
Small nuclear ribonucleoprotein F, putative.
   
 0.854
PITG_05680
Uncharacterized protein.
    
 0.850
PITG_15653
Small nuclear ribonucleoprotein G.
   
  0.837
PITG_05666
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.829
PITG_09598
U4/U6.U5 tri-snRNP-associated protein, putative.
   
 0.824
PITG_08011
Pre-mRNA-splicing factor RSE1.
   
 
 0.822
Your Current Organism:
Phytophthora infestans
NCBI taxonomy Id: 403677
Other names: P. infestans T30-4, Phytophthora infestans T30-4, Phytophthora infestans strain T30-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.