STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PITG_09042DEAD/DEAH box RNA helicase, putative. (1049 aa)    
Predicted Functional Partners:
PITG_02564
Exosome complex exonuclease RRP6-like protein.
   
 0.988
PITG_17723
Uncharacterized protein.
   
 0.981
PITG_09374
WD_REPEATS_REGION domain-containing protein.
   
 0.980
PITG_09728
Exosome complex exonuclease RRP4.
   
 0.980
PITG_15529
Exosome complex exonuclease RRP45-like protein.
   
 0.980
PITG_16138
Exosome complex exonuclease RRP42-like protein.
   
 0.979
PITG_17106
RNase_PH domain-containing protein.
   
 0.979
PITG_18750
Uncharacterized protein.
   
 0.979
PITG_07829
Exosome complex exonuclease RRP43, putative.
   
 0.977
PITG_20903
Exosome complex exonuclease RRP40, putative.
   
 0.977
Your Current Organism:
Phytophthora infestans
NCBI taxonomy Id: 403677
Other names: P. infestans T30-4, Phytophthora infestans T30-4, Phytophthora infestans strain T30-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.