STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PITG_09943Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43. (719 aa)    
Predicted Functional Partners:
PITG_05411
Uncharacterized protein.
   
 0.997
PITG_09439
Sas10 domain-containing protein.
   
 0.992
PITG_03987
DEAD/DEAH box RNA helicase, putative.
   
 0.989
PITG_01528
Cell division cycle 5-related protein, putative.
   
 0.986
PITG_08211
U2-associated splicing factor, putative.
   
 0.986
PITG_19646
Pre-mRNA-processing factor 19, putative.
   
 0.986
PITG_09401
Pre-mRNA-splicing factor ini1.
   
 0.985
PITG_23192
Small nuclear ribonucleoprotein F, putative.
   
 0.984
PITG_16012
SURP motif domain-containing protein.
   
 0.983
PITG_05666
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.982
Your Current Organism:
Phytophthora infestans
NCBI taxonomy Id: 403677
Other names: P. infestans T30-4, Phytophthora infestans T30-4, Phytophthora infestans strain T30-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.