STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PITG_16179Rab3 GTPase-activating protein catalytic subunit, putative. (843 aa)    
Predicted Functional Partners:
PITG_17137
Uncharacterized protein.
   
 0.999
PITG_13809
Rab18 family GTPase, putative.
    
 0.866
PITG_06833
Uncharacterized protein.
   
 
 0.812
PITG_18713
Rab6 family GTPase, putative.
     
 0.752
PITG_12843
Rab proteins geranylgeranyltransferase component A, putative.
   
 
 0.746
PITG_03873
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.
     
 0.715
PITG_05458
Uncharacterized protein.
   
 
  0.714
PITG_01997
Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.
   
 
  0.688
PITG_00699
Dynactin subunit 5, putative.
   
 
  0.687
PITG_21067
WD_REPEATS_REGION domain-containing protein.
   
 
 0.660
Your Current Organism:
Phytophthora infestans
NCBI taxonomy Id: 403677
Other names: P. infestans T30-4, Phytophthora infestans T30-4, Phytophthora infestans strain T30-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.