STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PITG_16314Vacuolar protein sorting-associated protein 53. (834 aa)    
Predicted Functional Partners:
PITG_00495
Fat-free family protein.
    
 0.829
PITG_05667
Vacuolar protein sorting-associated protein, putative.
   
 0.829
PITG_20200
Vacuolar protein sorting-associated protein, putative.
   
 0.747
PITG_18713
Rab6 family GTPase, putative.
    
 0.598
PITG_03609
Uncharacterized protein.
    
 
 0.590
PITG_00529
Conserved oligomeric Golgi complex subunit 8, putative.
   
 
 0.536
PITG_16969
Conserved oligomeric Golgi complex subunit, putative.
   
 
 0.517
PITG_10794
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
     
 0.507
PITG_21222
Uncharacterized protein.
   
 
 0.506
PITG_22763
Conserved oligomeric Golgi complex subunit, putative.
     
 0.502
Your Current Organism:
Phytophthora infestans
NCBI taxonomy Id: 403677
Other names: P. infestans T30-4, Phytophthora infestans T30-4, Phytophthora infestans strain T30-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.