STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PITG_17950Helicase ATP-binding domain-containing protein. (988 aa)    
Predicted Functional Partners:
PITG_03604
Uncharacterized protein.
   
 0.969
PITG_13464
Uncharacterized protein.
   
 0.969
PITG_15820
Helicase ATP-binding domain-containing protein.
  
  
 
0.905
PITG_17617
TFIIH basal transcription factor complex helicase XPB subunit.
   
 0.899
PITG_03523
General transcription factor IIH subunit, putative.
    
 0.898
PITG_23065
General transcription factor IIH subunit, putative.
    
 0.897
PITG_00220
General transcription factor IIH subunit, putative.
    
 0.893
PITG_15486
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.893
PITG_07745
RING-type domain-containing protein.
    
 0.891
PITG_13158
Double-strand break repair protein, putative; Belongs to the MRE11/RAD32 family.
   
 0.870
Your Current Organism:
Phytophthora infestans
NCBI taxonomy Id: 403677
Other names: P. infestans T30-4, Phytophthora infestans T30-4, Phytophthora infestans strain T30-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.