STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDT20403.1(R,R)-butanediol dehydrogenase (fragment). (166 aa)    
Predicted Functional Partners:
CDT08439.1
Short chain dehydrogenase.
  
 
  0.777
atpA
F1 sector of membrane-bound ATP synthase, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.756
atpD
Membrane-bound ATP synthase, F1 sector, beta-subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.756
CDS92860.1
H+-transporting two-sector ATPase, C subunit.
     
 0.755
atpC
ATP synthase epsilon chain.
     
 0.753
CDT30706.1
Putative naringenin-chalcone synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
 
  0.746
atpG
ATP synthase gamma chain.
     
 0.743
CDT25042.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
     
 0.743
yjjN
Putative L-galactonate oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.728
guaA
GMP synthetase (glutamine aminotransferase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
  0.717
Your Current Organism:
Sphingobacterium sp. PM2P129
NCBI taxonomy Id: 403776
Other names: S. sp. PM2-P1-29, Sphingobacterium sp. PM2-P1-29
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.